ISSR as a tool to support taxonomic decisions: a first approach for Chascolytrum species complexes (Poaceae)

Authors

  • Liliana Essi Universidade Federal de Santa Maria https://orcid.org/0000-0001-5548-6448
  • Hilda Maria Longhi Wagner Universidade Federal do Rio Grande do Sul
  • Tatiana Teixeira de Souza Chies Universidade Federal doRio Grande do Sul

DOI:

https://doi.org/10.20873/10.20873/jbb.uft.cemaf.v5n2.essi

Keywords:

Briza, molecular marker, Poeae, sistemática

Abstract

Chascolytrum Desv. is a South American grass genus, with extension up to Central America, which presents several taxonomic controversies concerning genera and species circumscriptions. Morphological studies were not able to provide robust elements for taxonomic decisions in some species complexes. It was the case of Chascolytrum subaristatum and morphological allies, and of Chascolytrum rufum plus the acceptance (or rejection) of two varieties. In order to provide additional elements for taxonomic decisions in these species complexes, it was performed a preliminary survey using Inter Simple Sequence Repeat (ISSR) markers. Nine primers were used to build similarity dendrograms, and 25 collections  were included, analysed in two separated complexes. ISSR were able to separate the two varieties of Chascolytrum rufum, supporting their acceptance. Two species recently described could be clearly separated from their morphologically related taxa, but the species Briza erecta, Briza macrostachya and Chascolytrum subaristatum, as well as Briza subaristata var. interrupta, could not be separated, adding elements to the synonymization of these three taxa under Chascolytrum ubaristatum. The ISSR contributed to solving some controversies on genus Chascolytrum, but its use as an exclusive species-marker is limited in this genus due to high band polymorphism.

References

ALEXANDER, J., LISTON, A., POPOVICH, S. Genetic diversity of the narrow endemic Astragalus oniciformis (Fabaceae). American Journal of Botany, v. 91, p. 2004 - 2012, 2004.

AYRES, D.R., STRONG, D.R. Origin and genetic diversity of Spartina anglica (Poaceae) using nuclear DNA markers. American Journal of Botany, v. 88, n. 10, p. 1863 - 1867. 2001.

BLAIR, M. W., PANAUD, O., MCCOUCH, S.R. Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellites motif frequency and fingerprinting in rice (Oryza sativa L.). Theoretical and Applied Genetics, v. 98, p. 780 – 792, 1999.

BUSSELL, J. D., WAYCOTT, M., CHAPPILL, J. A. Arbitrarily amplified DNA markers as characters for phylogenetic inference. Perspectives in Plant Ecology, Evolution and Systematics, v. 7, p. 3 – 26, 2005.

DINELLI, G. Characterization of Italian populations of Lolium spp. resistant and susceptible to diclofop by inter simple sequence repeat. Weed Science, v. 52, p. 554 - 563, 2004.

DOYLE, J. D., DOYLE, J. L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, v. 19, p. 11 – 15, 1987.

ESSELMAN, E. J. et al. Clonal diversity in the rare Calamagrostis porteri ssp. insperata (Poaceae): comparative results for allozymes and random amplified polymorphic DNA (RAPD) and inter simple sequence repeat (ISSR) markers. Molecular Ecology, v. 8, p. 443-451, 1999.

ESSI, L., LONGHI-WAGNER, H. M., SOUZA-CHIES, T. T. New Combinations Within the Briza Complex (Poaceae, Pooideae, Poeae). Novon, v. 21, n. 3, p. 326 – 330, 2011.

ESSI, L., LONGHI-WAGNER, H. M., SOUZA-CHIES, T. T. Phylogenetic analysis of the Briza Complex (Poaceae). Molecular Phylogenetics and Evolution, v. 47, p. 1018-1029. 2008.

FELSENSTEIN, J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, v. 39, p. 783 - 791, 1985.

JOSHI, S. P. et al. Genetic diversity and phylogenetic relationship as revealed by Inter Simple Sequence Repeat (ISSR) polymorphism in the genus Oryza. Theoretical and Applied Genetics, v. 100, p. 1311 – 1320, 2000.

LI, A., GE, S.Genetic Variation and Clonal Diversity of Psammochloavillosa (Poaceae) Detected by ISSR Markers. Annals of Botany, v. 87, p. 585 - 590, 2001.

LIN, W. X. et al.Use of ISSR molecular marker approach to estimate genetic diversity in rice and barley allelopathy. Proceedings of the 4th World Congress on Allelopathy, eds. HARPER, J. D. I, AN, M., WU, H. AND KENT, J. H. Charles Sturt University, WaggaWagga, NSW, Australia. August 2005. International Allelopathy Society.

LONGHI-WAGNER, H. M. Flora Ilustrada do Rio Grande do Sul, Fasc. 17. Gramineae. Tribo Poeae. Boletim do Instituto de Biociências, v. 41, p. 1 – 191, 1987.

MARTINS, M., TENREIRO, R., OLIVEIRA, M. M. Genetic relatedness of Portuguese almond cultivars assessed by RAPD and ISSR markers. Plant Cell Report, v. 22, p. 71 – 78, 2003.

MATTHEI, O. Der Briza-Komplex in Südamerika: Briza, Calotheca, Chascolytrum, Poidium (Gramineae). Willdenowia, v. 8, p. 7 – 168, 1975.

MATTIONI, C. et al. Comparison of ISSR and RAPD markers to characterize three Chilean Nothofagus species. Theoretical and Applied Genetics, v. 104, p. 1064 – 1070, 2002.

POULIN, J., WELLER, S. G., SAKAI, A. K. Genetic diversity does not affect the invasiveness of fountain grass (Pennisetum setaceum) in Arizona, California and Hawaii. Diversity and Distribution, v. 11, p. 241 – 247, 2005.

QIAN, W., GE, S., HONG, D-Y. Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theoretical and Applied Genetics, v. 102, p. 440 – 449, 2001.

ROHLF, F. J.NTSYS-pc: numerical taxonomy and multivariate analysis system, version 2.10 New York: Exeter Software, 2000.

SONG, Z. et al. Inter-simple sequence repeat (ISSR) variation in populations of the cutgrass Leersiahexandra. Aquatic Botany, v. 84, p. 359–362, 2006.

SOUZA, V. Q. et al. Dissimilaridade genética em mutantes de aveia tolerantes e sensíveis a ácidos orgânicos. Bragantia, v. 64, n. 4, p. 569 – 575, 2005.

VANDERPOORTEN, A., HEDENÄS, L., JACQUEMART, A-L. Differentiation in DNA fingerprinting and morphology among species of the pleurocarpous moss genus, Rhytidiadelphus (Hylocomiaceae). Taxon, v. 52, p. 229 - 236, 2003.

VERGARA, R. et al. Preliminary Study Using ISSRs to Differentiate Imperata Taxa (Poaceae: Andropogoneae) Growing in the US. Southeastern Naturalist, v. 7, n. 2, p. 267 - 276, 2008.

WINGE, H. et al. Sistemática e evolução das espécies sul-americanas do Complexo Briza (Gramineae). In: Colóquio Sobre Citogenética e Evolução de Plantas, 1. Sociedade Brasileira de Genética, Piracicaba, p. 185 - 203, 1984.

WU, C. et al. Genetic diversity among and within populations of Oryza granulata from Yunnan of China revealed by RAPD and ISSR markers: implications for conservation of endangered species. Plant Science, v. 167, p. 35 - 42, 2004.

YAP, I. V., NELSON, R. J. Winboot: a program for performing bootstrap analysis of binary data to determinate the confidence limits of UPGMA-based dendrograms. Manila: IRRI. 22p. 1996.

ZHANG, Q. X. et al. Genetic diversity of natural Miscanthussinensis populations in China revealed by ISSR markers. Biochemical Systematics and Ecology, v. 48, p. 248–256, 2013.

ZIETKIEWICZ, E., RAFALSKI, A., LABUDA, D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, v. 20, p. 176 – 183, 1994.

Downloads

Published

2020-01-02

How to Cite

Essi, L., Wagner, H. M. L., & Chies, T. T. de S. (2020). ISSR as a tool to support taxonomic decisions: a first approach for Chascolytrum species complexes (Poaceae). Journal of Biotechnology and Biodiversity, 5(2), 202–210. https://doi.org/10.20873/10.20873/jbb.uft.cemaf.v5n2.essi